Package infovis.tree.io

Manage input and ouput of trees using various formats or sources.

See:
Description

Interface Summary

NewickTokenTypes

Parser and Lexer for the Newick Tree format.

Class Summary

AbstractTreeReader	Abstract Reader for Trees.
AbstractTreeWriter	Abstract Writer for Trees.
DirectoryReaderCreator	Class DirectoryReaderCreator
DirectoryTreeReader	Reader of Directory.
FileListTreeReader	Class FileListTreeReader Creates a tree from a list of file names, one per line.
JarReaderCreator	Creator for JarTreeReader
JarTreeReader	Creates a Class Tree from a Jar File.
NewickLexer	Lexer for the Newick Tree format.
NewickParser	Parser for the Newick Tree format.
NewickTreeReader	Read Trees in Newick format, usually for phylogenetic trees.
SimpleXMLTreeReader	Simple Reader for an XML tree.
TM3TreeReader	Reader for the UMD Treemap TM3 Format.
TreeReaderFactory	Factory of tree readers.
TreeReaderFactory.DefaultCreator
XMLTreeReader	Tree Reader for the treemal DTD.
XMLTreeWriter	Writer according to the treeml DTD.

Package infovis.tree.io Description

Manage input and ouput of trees using various formats or sources.