Uses of Interface
infovis.Tree

Packages that use Tree

infovis.graph	Provides a set of classes related to visualization of graphs.
infovis.metadata	Provides for Metadata management.
infovis.panel	Provides a set of components for interacting with visualizations.
infovis.tree	Provides a set of classes related to visualization of trees.
infovis.tree.io	Manage input and ouput of trees using various formats or sources.
infovis.tree.visualization	Provides trees visualizations.
infovis.utils	Utilities classes for the Infovis Toolkit.

Uses of Tree in infovis.graph

Methods in infovis.graph that return Tree

Tree	HierarchicalGraph.getTree()

Uses of Tree in infovis.metadata

Methods in infovis.metadata with parameters of type Tree

Column	MinAggregation.aggregate(Column src, Tree tree, Column dst)
Column	AtLeafAggregation.aggregate(Column src, Tree tree, Column dst)
Column	Aggregation.aggregate(Column src, Tree tree, Column dst) Computes the aggregation values of the specified source column into the destination column.
Column	AdditiveAggregation.aggregate(Column src, Tree tree, Column dst) Computes the aggregation values of the specified source column into the destination column.
static short	AdditiveAggregation.analyzeAdditiveWeight(NumberColumn col, Tree tree) Checks whether a NumberColumn is a valid sizeColumn.
static ColumnProxy	MinAggregation.build(Column src, Tree tree)
static NumberColumn	AdditiveAggregation.buildAdditiveWeight(NumberColumn src, Tree tree, DoubleFunction fn, RowDoubleValueGenerator gen, NumberColumn dst) Creates a NumberColumn to be a valid sizeColumn by computing the sum of the leave and undefining non leaf nodes.
Aggregation	AggregationFactory.get(Column col, Tree tree)
static Aggregation	AggregationFactory.getAggregation(Column col, Tree tree)
static String	AggregationFactory.getAggregationType(Column col, Tree tree) Returns the aggregation type name of a specified column in a specified tree.
String	AggregationFactory.getType(Column col, Tree tree)
String	AggregationFactory.guessAggregationType(Column col, Tree tree)
static short	AdditiveAggregation.isAdditive(NumberColumn col, Tree tree) Returns whether a NumberColumn is a valid sizeColumn.
boolean	MinAggregation.isAggregating(Column col, Tree tree)
boolean	AtLeafAggregation.isAggregating(Column col, Tree tree)
boolean	Aggregation.isAggregating(Column col, Tree tree) Checks whether a column is aggregating following the class aggregation scheme.
boolean	AdditiveAggregation.isAggregating(Column col, Tree tree) Checks whether a column is aggregating following the class aggregation scheme.
static boolean	AtLeafAggregation.isAtLeaf(Column col, Tree tree)

Constructors in infovis.metadata with parameters of type Tree

AdditiveAggregation.NonAdditiveFilter(Tree tree)
Constructor.

MinAggregation.DenseColumn(Column src, Tree tree)

Uses of Tree in infovis.panel

Methods in infovis.panel with parameters of type Tree

TreeVisualization

MainFrameDecorator.createTreeVisualization(String name, Tree tree) DOCUMENT ME!

Uses of Tree in infovis.tree

Classes in infovis.tree that implement Tree

class	DefaultTree Default implementation of the Tree interface.
class	TreeAsGraph Class TreeAsGraph
class	TreeProxy

Methods in infovis.tree that return Tree

Tree	TreeProxy.getTree()
static Tree	Algorithms.insert(Tree fromTree, int fromRoot, Tree toTree, int toRoot)
static Tree	Algorithms.insert(Tree fromTree, Tree toTree)

Methods in infovis.tree with parameters of type Tree

static boolean	StructureChecker.check(Tree tree)
boolean	Compare.equals(Tree tree1, Tree tree2)
static LeafCountColumn	LeafCountColumn.findColumn(Tree tree) Returns the TreeCountColumn associated with the specified tree, creating it if necessary.
static DepthColumn	DepthColumn.findColumn(Tree tree)
static DegreeColumn	DegreeColumn.findColumn(Tree tree) Returns the DegreeColumn of this tree if it exists and creates it otherwise.
static LeafCountColumn	LeafCountColumn.getColumn(Tree tree) Returns the TreeCountColumn associated with the specified tree or null.
static DepthColumn	DepthColumn.getColumn(Tree tree)
static DegreeColumn	DegreeColumn.getColumn(Tree tree) Returns the DegreeColumn of this tree if it exists or null.
static Tree	Algorithms.insert(Tree fromTree, int fromRoot, Tree toTree, int toRoot)
static Tree	Algorithms.insert(Tree fromTree, Tree toTree)
static int	Algorithms.leafCount(Tree tree, int node)
static int	Algorithms.leafCount(Tree tree, int node, int[] sumDegrees)
static int	Algorithms.treeDepth(Tree tree)
static int	Algorithms.treeDepth(Tree tree, int root)
static void	BreadthFirst.visit(Tree tree, BreadthFirst.Visitor visitor, int node)
static void	BreadthFirst.visit(Tree tree, BreadthFirst.Visitor visitor, int node, IntStack Q) Traverse the tree starting at a node with a breadth first traversal, calling the visitor at each node.
static void	DepthFirst.visit(Tree tree, DepthFirst.Visitor visitor) Traverse the tree starting at a node with a depth first traversal, calling the visitor at each node.
static void	DepthFirst.visit(Tree tree, DepthFirst.Visitor visitor, int node) Traverse the tree starting at a node with a depth first traversal, calling the visitor at each node.
static void	DepthFirst.visitPreorder(Tree tree, IntProcedure visitor)
static void	DepthFirst.visitPreorder(Tree tree, IntProcedure visitor, int node)

Constructors in infovis.tree with parameters of type Tree

StructureChecker(Tree tree)
Constructor for StructureChecker.

TreeAsGraph(Tree tree)

TreeIntColumn(String name, Tree tree)
Constructor.

TreeProxy(Tree tree)

Uses of Tree in infovis.tree.io

Methods in infovis.tree.io that return Tree

static Tree

TreeReaderFactory.getTree(Table table) Returns a tree from a table.

Methods in infovis.tree.io with parameters of type Tree

static AbstractReader	TreeReaderFactory.createTreeReader(String name, Tree tree) Creates a tree reader from a specified resource name and a tree
static int	AbstractTreeReader.findNode(String name, int parent, Tree tree, StringColumn nameColumn)
static boolean	TreeReaderFactory.readTree(String name, Tree tree)

Constructors in infovis.tree.io with parameters of type Tree

DirectoryTreeReader(BufferedReader ignore, String directory, Tree tree)

DirectoryTreeReader(String directory, Tree tree)

FileListTreeReader(InputStream in, String name, Tree tree)

JarTreeReader(InputStream in, String name, Tree tree)

NewickTreeReader(InputStream in, String name, Tree tree)
Constructor for NewickTreeReader.

SimpleXMLTreeReader(InputStream in, String name, Tree tree)
Constructor for SimpleXMLTreeReader.

TM3TreeReader(InputStream in, String name, Tree tree)
Constructor for TM3TreeReader.

TM3TreeReader(InputStream in, Tree tree)
Constructor for TM3TreeReader.

XMLTreeReader(InputStream in, String name, Tree tree)
Constructor for XMLTreeReader.

XMLTreeWriter(OutputStream out, Tree tree)
Constructor for XMLTreeWriter.

Uses of Tree in infovis.tree.visualization

Classes in infovis.tree.visualization that implement Tree

class	IcicleTreeVisualization
class	NodeLinkTreeVisualization Node Link Diagram Visualization of Trees.
class	TreemapVisualization Visualization of a Tree using a Treemap layout.
class	TreeVisualization Abstract base class for tree visualizations.

Methods in infovis.tree.visualization that return Tree

Tree	TreeVisualization.getTree() Returns the tree.
Tree	TreeControlPanel.getTree() Returns the managed tree.

Methods in infovis.tree.visualization with parameters of type Tree

static RainbowColumn	RainbowColumn.findColumn(Tree tree) Returns a RainbowColumn associated with the specified tree, creating it if needed.
static RainbowColumn	RainbowColumn.getColumn(Tree tree) Returns a RainbowColumn associated with the specified tree or null if none exists.

Constructors in infovis.tree.visualization with parameters of type Tree

IcicleTreeVisualization(Tree tree)
Constructor for IcicleTreeVisualization.

IcicleTreeVisualization(Tree tree, ItemRenderer ir)
Constructor for IcicleTreeVisualization.

NodeLinkTreeVisualization(Tree tree)
Constructor for NodeLinkTreeVisualization.

NodeLinkTreeVisualization(Tree tree, ItemRenderer ir)
Constructor for NodeLinkTreeVisualization.

TreemapVisualization(Tree tree)
Creates a new TreemapVisualization object.

TreemapVisualization(Tree tree, Treemap treemap)
Creates a new TreemapVisualization object.

TreeVisualization(Tree tree)
Constructor for TreeVisualization.

TreeVisualization(Tree tree, ItemRenderer ir)
Constructor for TreeVisualization.

Uses of Tree in infovis.utils

Constructors in infovis.utils with parameters of type Tree

RowIsLeafGenerator(Tree tree)