infovis.tree.io
Class NewickTreeReader

java.lang.Object
  extended by infovis.io.AbstractReader
      extended by infovis.table.io.AbstractTableReader
          extended by infovis.tree.io.AbstractTreeReader
              extended by infovis.tree.io.NewickTreeReader

public class NewickTreeReader
extends AbstractTreeReader

Read Trees in Newick format, usually for phylogenetic trees.

Version:
$Revision: 1.16 $
Author:
Jean-Daniel Fekete
InfoVis factory arguments:
TreeReaderFactory nh

Constructor Summary
NewickTreeReader(InputStream in, String name, Tree tree)
          Constructor for NewickTreeReader.
 
Method Summary
 boolean load()
          Main method for loading the file.
 
Methods inherited from class infovis.tree.io.AbstractTreeReader
findNode
 
Methods inherited from class infovis.table.io.AbstractTableReader
close, getBuffer, getBufferedReader, getCommentChar, getField, getIn, getTable, ignoreLine, isEof, read, readInt, readLine, readQuoted, setBuffer, setCommentChar, setEof, setTable, skipToEol
 
Methods inherited from class infovis.io.AbstractReader
createColumn, getEncoding, getName, guessFieldType, setEncoding, setIn, setName
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

NewickTreeReader

public NewickTreeReader(InputStream in,
                        String name,
                        Tree tree)
Constructor for NewickTreeReader.

Parameters:
in -
name -
tree -
Method Detail

load

public boolean load()
Description copied from class: AbstractReader
Main method for loading the file. The loading may fail at any point, leaving the table in an indefinite state if the methods returns false.

Specified by:
load in class AbstractReader
Returns:
true if the file has been loaded without error, false otherwise.
See Also:
AbstractReader.load()


Copyright 2005 by Jean-Daniel Fekete and INRIA, France All rights reserved.